1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatgattcgttgtgtggtcagtggtgtatttgttaggaatatatggtatcttaagttgtgaccttaaattctaatttgtagcttttctcgtgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTT
species | Glycine max |
transcript | GLYMA03G06440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTCGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|192300483|gb|FG987910.1|FG987910
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|7284412|gb|AW597004.1|AW597004
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAACCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|9203665|gb|BE329889.1|BE329889
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|298196174|gb|HO044565.1|HO044565
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: AGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|9986822|gb|BE660930.1|BE660930
genomic: AGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|298190510|gb|HO032631.1|HO032631
genomic: TCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCAGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|13789053|gb|BG651644.1|BG651644
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCAGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|298186402|gb|HO037035.1|HO037035
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCAGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAAAGGCTCAATGCTCCAAAACACTGGEST: gi|17401982|gb|BM178764.1|BM178764
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: GCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGEST: gi|208166186|gb|GD959120.1|GD959120
genomic: GCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG GCGAGAGGGTTGAAAGAAACACTTGAAG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAA-GAAACACTTGAAG
gtatcttaagttgtgaccttaaattctaatttgtagcttttctcgtgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTT
ttctaat putative branch site (score: 2)
cttttctcgt putative PPT
ttaaattctaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgattcgttgtgtggtcagtggtgtatttgttaggaatatatggtatcttaagttgtgaccttaaattctaatttgtagcttttctcgtgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - tgtgtgg
- - - - - - - - - -agtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -agttgtg