Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagttatatagttggtgtgatggattgatgaggtgtggttttttggtgtgtgaatggagtgatattgtaatttggaattttttctcttgatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGGAGTGTCCCTCCAAACTGGAAGCCTACAATTGATGAGGAAAGGGGAGAGG

Basic information

species Glycine max
transcript GLYMA03G02930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601051|gb|BQ611382.1|BQ611382
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|192301934|gb|FG995552.1|FG995552
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|192334158|gb|FK026539.1|FK026539
EST:     GGCTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|213599085|gb|DB966387.1|DB966387
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|192325698|gb|FK015055.1|FK015055
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|12496102|gb|BG046895.1|BG046895
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|27424346|gb|CA935866.1|CA935866
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|192325928|gb|FK016605.1|FK016605
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
EST: gi|14125611|gb|BG790049.1|BG790049
EST:     GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTG                         TTGGTTATGCTGCTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG
genomic: GACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGgtaagcttct ... gatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgtgtgaatggagtgatattgtaatttggaattttttctcttgatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGGAGTGTCCCTCCAAACTGGAAGCCTACAATTGATGAGGAAAGGGGAGAGG
                                         tcttgat  putative branch site (score: 4)
                                  ttttttctcttgattt  CT-rich tract
                  atattgtaatttggaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaagttatatagttggtgtgatggattgatgaggtgtggttttttggtgtgtgaatggagtgatattgtaatttggaattttttctcttgatttcacagTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGGAGTGTCCCTCCAAACTGGAAGCCTACAATTGATGAGGAAAGGGGAGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - tggtgtg
- - - - - - - - - - - - - - - - -ggtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagtg