1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataggactgtaggtagtattttgatgaggcctgctttttcgtaaatcaccattgattccttatcctgtcaatttgttcatcttgcatttattttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAGTTTTACTATGCTCATGGTCAATTGGGGGACGCTTTTAAAAGTTATGTCC
species | Glycine max |
transcript | GLYMA03G01880.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCGGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCGTATAGG ACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAGEST: gi|27427398|gb|CA938918.1|CA938918
genomic: GAGCGGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCGTATAGGgtgagttttt ... ttttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAG
EST: AGAAGCTCGAGAACGAACTCAATGCGTATAGG ACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAGEST: gi|11688928|gb|BF596666.1|BF596666
genomic: AGAAGCTCGAGAACGAACTCAATGCGTATAGGgtgagttttt ... ttttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAG
EST: GAGCGGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCGTATAGG ACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAGEST: gi|13562787|gb|BG551007.1|BG551007
genomic: GAGCGGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCGTATAGGgtgagttttt ... ttttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAG
EST: GAGCGGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCGTATAGG ACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAG
genomic: GAGCGGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCGTATAGGgtgagttttt ... ttttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAG
tcaccattgattccttatcctgtcaatttgttcatcttgcatttattttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAGTTTTACTATGCTCATGGTCAATTGGGGGACGCTTTTAAAAGTTATGTCC
cattgat putative branch site (score: 4)
tttatttttt putative PPT
ttgcatttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataggactgtaggtagtattttgatgaggcctgctttttcgtaaatcaccattgattccttatcctgtcaatttgttcatcttgcatttattttttgcagACAAACTTAATTAAGGAAAGCATTAGAATGGGATACAATGATTTTGGAGAGTTTTACTATGCTCATGGTCAATTGGGGGACGCTTTTAAAAGTTATGTCC
- - gactgta
- - - - - - - - - - - - - -ggcctgc
- - - - - - - - - - - - - - - - - - - - - - -tcaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt