1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtaaaactcaatgcacaccacctttggtgttcatttcatgttaaatttggttgttgtatatacttaaagttttccgtcatttcttctgtgtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTAC
species | Glycine max |
transcript | GLYMA03G00920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|213587981|gb|DB971456.1|DB971456
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|213617616|gb|DB969328.1|DB969328
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|209728695|gb|BW655402.1|BW655402
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|151407227|gb|EV277042.1|EV277042
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|10236160|gb|BE805048.1|BE805048
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|151394787|gb|EV264658.1|EV264658
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|4285741|gb|AI440947.1|AI440947
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|151401464|gb|EV271278.1|EV271278
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|298174935|gb|HO014852.1|HO014852
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|193327580|gb|FK292971.1|FK292971
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: ATTCATCCAAGAAGACC-AAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|207766661|gb|GD738289.1|GD738289
genomic: ATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: CTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|298189804|gb|HO038207.1|HO038207
genomic: CTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|13788917|gb|BG651508.1|BG651508
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|208183354|gb|GD985272.1|GD985272
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|18690778|gb|BM519626.1|BM519626
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|193406399|gb|FK373048.1|FK373048
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|298186113|gb|HO036746.1|HO036746
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|151399348|gb|EV269219.1|EV269219
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: GAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|298178943|gb|HO024678.1|HO024678
genomic: GAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACEST: gi|4285622|gb|AI440930.1|AI440930
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
atttggttgttgtatatacttaaagttttccgtcatttcttctgtgtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTAC
tatatacttaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaaactcaatgcacaccacctttggtgttcatttcatgttaaatttggttgttgtatatacttaaagttttccgtcatttcttctgtgtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-gtaaaac
- - - - - aatgcac
- - - - - - - - - ccacctt
- - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - gttgttg