1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattcatttacatgtaataaagtctcatcatatcatatcatacaagatttttatgatcaaataatattggttaatttattacaagaaaagaaatttcatcaaataaaactatgcagAGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCATTGGAACCTGGAAGAGTAACATTTGACGACAAAATGGTAGTGAGGAAAG
species | Glycine max |
transcript | GLYMA0317S00200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACTCCAACTTAAACTTGTTGATGCAATAAAAGAAGCTGGAAACACCAAG AGATTTTTGCCCTCGGAGTTTGGTACTGATEST: gi|192325683|gb|FK015040.1|FK015040
genomic: TACTCCAACTTAAACTTGTTGATGCAATAAAAGAAGCTGGAAACATCAAGgtaattcatt ... aactatgcagAGATTTTTGCCCTCGGAGTTTGGGACTGAT
EST: TACTCCAACTTAAACTTGTTGATGCAATAAAAGAAGCTGGAAACATCAAG AGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCAEST: gi|151412917|gb|EV282729.1|EV282729
genomic: TACTCCAACTTAAACTTGTTGATGCAATAAAAGAAGCTGGAAACATCAAGgtaattcatt ... aactatgcagAGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCA
EST: TACTCCAACTTAAACTTGTTGATGCAATAAAAGAAGCTGGAAACATCAAG AGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCA
genomic: TACTCCAACTTAAACTTGTTGATGCAATAAAAGAAGCTGGAAACATCAAGgtaattcatt ... aactatgcagAGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCA
taatattggttaatttattacaagaaaagaaatttcatcaaataaaactatgcagAGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCATTGGAACCTGGAAGAGTAACATTTGACGACAAAATGGTAGTGAGGAAAG
ggttaat putative branch site (score: 4)
ttaatttattacaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcatttacatgtaataaagtctcatcatatcatatcatacaagatttttatgatcaaataatattggttaatttattacaagaaaagaaatttcatcaaataaaactatgcagAGATTTTTGCCCTCGGAGTTTGGGACTGATCCGGCAAGAATGGCGCATGCATTGGAACCTGGAAGAGTAACATTTGACGACAAAATGGTAGTGAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA