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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcagGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACATCGCACAGGCTTTGCACTATTGCAGTTCTGAGGGGCGTCCCTTGTACCA

Basic information

species Glycine max
transcript GLYMA02G48030.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G48030.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------------------------------------------------------------gtatgtcttatctc---ttgtctagtagtgtttaacttatctg---ttcattgtttga-----------ttcattcattgattgattcattgattgattgatt-cagGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACATCGCACAGGCTTTGCACTATTGCAGTTCTGAGGGGCGTCCCTTGTACCA
                                                                                   ||||  |||| |    | |   |  || |  ||  |||  ||   |  | ||| | |           ||  ||  ||   |  ||  |   ||| ||  |  ||||||||| |||||| ||||||||||| ||| |||||||||| |     ||||| ||  |||||||| | ||||| ||| ||||||| ||||| ||||||||
gtatgctttttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacagGGGAAAATCAGACAATTGAGTGGGCTATGAGGTTGCGAGTAGGATATTACATAGCTGAGGCTTTGGATTATTGTAGTACTGAGGGTCGTCCATTGTACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285890|gb|BE023449.1|BE023449
EST:     CGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACT                         GGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACA
genomic: CGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtctta ... attgattcagGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgttcattgtttgattcattcattgattgattcattgattgattgattcagGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACATCGCACAGGCTTTGCACTATTGCAGTTCTGAGGGGCGTCCCTTGTACCA
                                            gattgat  putative branch site (score: 4)
         attgttt  TA-rich tract