1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgggaaaaatagacattagacaagtagcccttatctgcaaattttatttttgtttttttgtcttaaactttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
species | Glycine max |
transcript | GLYMA02G46300.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTCACAGATACAGTCGCCACCTTGTGCTTCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGTTGGAGGATEST: gi|208322368|gb|GE122577.1|GE122577
genomic: GATTCACAGATACAGTCGCCACCTTGTGCTTCCTTCCTTTGGTGTTCAAGgtcttcttct ... tggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGAT
EST: CTTCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGAT
genomic: CTTCCTTCCTTTGGTGTTCAAGgtcttcttct ... tggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGAT
tatttttgtttttttgtcttaaactttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
tttttttgtcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaaaaatagacattagacaagtagcccttatctgcaaattttatttttgtttttttgtcttaaactttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGATTGGGTGCTCCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - -aaaaata
- - - - - - - - - - - - - agccctt
- - - - - - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg