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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttttctttctccaactcatatatgcaagtgcatgcaatattcacacttgattttctcatcaatacatggctctttttagtgatttgtgtctttattttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATTTGGCCCTGCATGCATGCGCCGGGGAGCCTCCCCTCGCATTCCTCGACTC

Basic information

species Glycine max
transcript GLYMA02G46230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691114|gb|BG157450.1|BG157450
EST:     TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
EST: gi|120529221|gb|EH257355.1|EH257355
EST:     TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
EST: gi|7326625|gb|AW620423.1|AW620423
EST:     TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
EST: gi|27445855|gb|CA952978.1|CA952978
EST:     TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
EST: gi|193526304|gb|FK481604.1|FK481604
EST:     GAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAGGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: GAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
EST: gi|22541283|gb|BU091126.1|BU091126
EST:     TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
EST: gi|14205548|gb|BG839226.1|BG839226
EST:     TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAG                         ATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT
genomic: TCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGgtacgttttt ... ttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcatcaatacatggctctttttagtgatttgtgtctttattttgttaacagATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATTTGGCCCTGCATGCATGCGCCGGGGAGCCTCCCCTCGCATTCCTCGACTC
                                     tctttatttt  CT-rich tract
 tctttattttgttaa  TA-rich tract