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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatgttaatggtatttgtgtttgattttgtttggagagtgagtttgtggattttaacgtgtgattgtgattatggttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG

Basic information

species Glycine max
transcript GLYMA02G45430.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0135g00100.t01 (Vitis vinifera), 3'ss of exon 1
--------------------gtgagtaat--gttaatggtatttgtgtttgattttgtttggagagtgagtttgtggattttaacgtgtgattgtgattatggttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG
                     |  | ||      || || ||  |||||| ||||  ||       ||| | | | |||| | |  || | | ||        | |  ||||||||| |||||||||||||| || ||||| |||||| | ||||| ||||||||||| | ||||||| | ||||| || ||||| || |||||||| ||||
tttttcttttcctgaattttctcggcaaccaaacaaaggaataggtgttttatttaattcc-----tgaatctattgattctgaaatgggttcgtt-------tgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAGCATCCGAGGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCGTG

upper sequence: GLYMA02G45430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
-gtgagtaatgttaatggtatttgtgtttgattttgtttggagag---tgagtttgtggattttaacgtgtga---ttgtgattatggttgaa---gcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG
  |   | |  |       |||| | | | ||      ||||| |   || |  | | |   | | |   ||    || |  || || ||| |   ||||||||| ||||||||||| ||||| || ||||| ||  | ||  ||||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG

upper sequence: GLYMA02G45430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
------------gtgagtaatgttaatggtatttgtgtttgattttgtttggagagtgagtttgtggattttaacgtgtgattgtgattatggttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG
                 ||  | |    ||   | | ||| ||||| ||| | |  |     ||    |  |   || || | ||   | ||| ||  ||||||||| ||||||||||| ||||| || ||||| ||  | ||   |||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
atttttctgtcccaacatatggatggaagtgggttttttttatttttttttgggttttgacctg-atctaatggggtttgttcgtttgtttgggtgt-gcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196038|gb|HO044429.1|HO044429
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|9900133|gb|BE609101.1|BE609101
EST:     GAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298168671|gb|HO009601.1|HO009601
EST:     GGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298198941|gb|HO042304.1|HO042304
EST:     GGAGGCATTCGAAATCGGTGAAGATGGTTGCTGTGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298185354|gb|HO030567.1|HO030567
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAGTCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|192324020|gb|FK019311.1|FK019311
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193596934|gb|FK549152.1|FK549152
EST:     ATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|193537152|gb|FK497995.1|FK497995
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298176820|gb|HO023293.1|HO023293
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298188341|gb|HO035034.1|HO035034
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298184082|gb|HO029295.1|HO029295
EST:     GGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: GGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298192412|gb|HO036494.1|HO036494
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
EST: gi|298182314|gb|HO026489.1|HO026489
EST:     ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGG                         TTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG
genomic: ACAGGAATTGACGGAGGCATTCGAAATCGGTGAAGATGGTTGCTATGAGGgtgagtaatg ... gttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggagagtgagtttgtggattttaacgtgtgattgtgattatggttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG
                     ttttaac  putative branch site (score: 2)
                    attttaa  TA-rich tract