Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

Basic information

species Glycine max
transcript GLYMA02G43080.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 2
ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagtt-ttaaactttcgtgcttatgactg--ttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
       |   | || |     | ||| |   |||   | ||    |||||||||        |||   ||  | |||||     | | ||  ||  ||||||||||| || |||||||| ||| | |||||||||||||| ||||||||||||||||||||||| || || |||||||||
--gtatgaaaatatgatttggaactgtgatttttgtaatctgc-cttttttgtttttccaacatttttattgctgaacttcttgtcatgtgggtgcattacagGCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S461_1V6.1 (Physcomitrella patens), 3'ss of exon 1
ctaccataggttttggtcatt--taatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
   |   | | ||          |  | |  |  ||     |||  |  |  ||   || ||    | | ||| | |  | |  | ||  ||   |||  ||||| | || |||||||||||||| |||||||||||||| || ||||||||||||||||||||  |||||||||| || 
--cctgcaagcttaaaatgggggtggtttagggttttgaagttggttgatgatgaggaagtttgagtcgtgttctgagttctgtttctcttgtgcgttttagGCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
---ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgct-tatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
   | |  | ||    |    |  |  |||| |  |  |  || || | | |||| ||     |   ||  |   | |||| |  ||    |   || |  |||||| ||||  | ||||||||| | ||| | || ||||| |||| |||||||||||| |||||  ||||||||||||| 
aggcgaagacagaccctctggaggtg-tgtcggtttgtcaattggattttctttgctt---ccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttg----agttttaaactttcgtgcttatga-ctgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
      |  ||||  ||||||    |    | ||      |   | | |    |  ||||  |  ||     || |      ||| |  ||   | || |  |||||| | || |||||||||||| | |||||||||||||| || | ||| ||||||||||||||  |||||||||| |||
-----tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S38_194V6.1 (Physcomitrella patens), 3'ss of exon 1
ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttga---gttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
     || |||||  || |  |    | |    | |     |    ||| |   | | |   || ||    |||   ||||       || |      |  ||||| | || |||||||||||| | ||||||||||||||||| |  |||||||||||||||||  |||||||||| || 
---ttatcggtttacgtaaacttgctttacttgtacgaagagtgcgtttgttcctgagtgacgtgtggcttgttacgaactaattgttttcttgtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTC

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 3'ss of exon 1
ctaccataggttttg-gtcat-ttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
      | ||||| |   ||| ||  ||  |     |||| ||   |  |||| |||| ||| |      |||||    |||  || |  |   |  | |||||| | || |||||||||||| | |||||||||||||| || |||||||||||||| |||||| ||||||| || |||
--gaggttggtttcgtagcatatttttgaaatgtgcgctgatttttttcttttttttatttttttacgttgtttttgttttttttgttatttttttcttcagGCTCGTGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAATTGGGTGGCGCCTTT

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S282_25V6.1 (Physcomitrella patens), 3'ss of exon 1
---ctaccat-aggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
   ||    | ||  |  ||   ||   | |        |||  ||| ||    |||| |||| ||   || | |  |||| |  ||     ||    || |||||| | || |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| || || 
atgctggagtgagaatcagggtcttcggtattttggg-actggctga-tcaccctgttcaattggtacgtgtgct--aaacatgtgttgcggtgttgattccagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ14824 (Selaginella moellendorffii), 3'ss of exon 1
ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
                                            |      |      |   |   ||  ||   | | | ||| |         | ||||   | ||   ||||||||||||||||  ||||||||| || ||||||||||||||   ||| || || ||||| |||
-------------------------------------------gtgagagcgcgcggctatcgcgggatcttacgattcttgtgttg--------tgcagGTGCGCGGGCCGAAGAAGCATCTCAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTT

upper sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ26570 (Selaginella moellendorffii), 3'ss of exon 1
ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
                                            |      |      |   |   ||  ||   | | | ||| |         | ||||   | ||   |||||||||||| |||  ||||||||| || ||||||||||||||   ||| || || ||||| || 
-------------------------------------------gtgagagcgcgcggctatcgcgggatcttacgattcttgtgttg--------tgcagGTGCGCGGGCCGAAGAAGCATCTGAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338889|gb|GR847606.1|GR847606
EST:     GGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|21602405|gb|BQ612736.1|BQ612736
EST:     GAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6567163|gb|AW234786.1|AW234786
EST:     AGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|193385523|gb|FK350759.1|FK350759
EST:     GAGGTCACGTTAGGTAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGGTCACG--AGG-AGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7147515|gb|AW509437.1|AW509437
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6746785|gb|AW317241.1|AW317241
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4292427|gb|AI441903.1|AI441903
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6502344|gb|AW203717.1|AW203717
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|9439986|gb|BE440497.1|BE440497
EST:     AGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7926117|gb|AW832143.1|AW832143
EST:     CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213600643|gb|DB968775.1|DB968775
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298176444|gb|HO026679.1|HO026679
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4397449|gb|AI496446.1|AI496446
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8282832|gb|BE020393.1|BE020393
EST:     CTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213601395|gb|DB968711.1|DB968711
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|12772358|gb|BG237285.1|BG237285
EST:     CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298180910|gb|HO022349.1|HO022349
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298171801|gb|HO021393.1|HO021393
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|11687722|gb|BF595398.1|BF595398
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|10846499|gb|BF069362.1|BF069362
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6951685|gb|AW423753.1|AW423753
EST:     CTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|27426851|gb|CA938371.1|CA938371
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|20498572|gb|BQ273502.1|BQ273502
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|24136781|gb|BU927291.1|BU927291
EST:     CACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209711614|gb|BW671325.1|BW671325
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8827735|gb|BE211465.1|BE211465
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6719056|gb|AW306703.1|AW306703
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209722813|gb|BW682886.1|BW682886
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13787407|gb|BG649999.1|BG649999
EST:     CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209712826|gb|BW684181.1|BW684181
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298190664|gb|HO032785.1|HO032785
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|193563438|gb|FK521327.1|FK521327
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13480539|gb|BG509882.1|BG509882
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|19934743|gb|BQ079773.1|BQ079773
EST:     CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8283599|gb|BE021158.1|BE021158
EST:     GTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13252353|gb|BG363256.1|BG363256
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8284693|gb|BE022235.1|BE022235
EST:     CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4397095|gb|AI496092.1|AI496092
EST:     CTAG-TTCACAATTTCCAAATG                         G-TAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213618083|gb|DB963716.1|DB963716
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192323079|gb|FK017020.1|FK017020
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213612156|gb|DB956865.1|DB956865
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|16996882|gb|BM086254.1|BM086254
EST:     CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7692719|gb|AW760819.1|AW760819
EST:     GCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209714483|gb|BW684859.1|BW684859
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4396174|gb|AI495171.1|AI495171
EST:     CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|208335308|gb|GE133337.1|GE133337
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|10844949|gb|BF068138.1|BF068138
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|37993906|gb|CF805652.1|CF805652
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|10847614|gb|BF070266.1|BF070266
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|37993916|gb|CF805662.1|CF805662
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|254338581|gb|GR845724.1|GR845724
EST:     CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|9440022|gb|BE440533.1|BE440533
EST:     AGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213611713|gb|DB960641.1|DB960641
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298171044|gb|HO016076.1|HO016076
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|19934720|gb|BQ079750.1|BQ079750
EST:     GCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttgtttaatttgtgtttgagttttaaactttcgtgcttatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT
      gtttaat  putative branch site (score: 4)
       tttaatttgtgttt  TA-rich tract