Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcacatccttccttaatctattttagctttcattgtttcgtatttaattactggatttgagacaatgtgtttttcattgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAGGAGGTTGCTAAGTACAAG

Basic information

species Glycine max
transcript GLYMA02G42260.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309670|gb|FK002908.1|FK002908
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|10235634|gb|BE804522.1|BE804522
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAGGGGTGACCCTGAAG-AGGTCAGTGA
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACC-TGAAGGAGGTCAGTGA
EST: gi|9898939|gb|BE607907.1|BE607907
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|37997254|gb|CF808843.1|CF808843
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|213615062|gb|DB962774.1|DB962774
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|213593672|gb|DB971694.1|DB971694
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCTCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|37996490|gb|CF808079.1|CF808079
EST:     AAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: AAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|213611303|gb|DB972732.1|DB972732
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|7458651|gb|AW666101.1|AW666101
EST:     CTGAGAAAACCGGAGACAGTGCCTATCTCAACCTTATCCCCGTNCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|298198632|gb|HO040171.1|HO040171
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGA
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGA
EST: gi|213606530|gb|DB958998.1|DB958998
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|254344862|gb|GR851345.1|GR851345
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtttcgtatttaattactggatttgagacaatgtgtttttcattgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAGGAGGTTGCTAAGTACAAG
           atttaat  putative branch site (score: 4)
                                       tttttcatt  putative PPT
     tttcgtatttaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttcacatccttccttaatctattttagctttcattgtttcgtatttaattactggatttgagacaatgtgtttttcattgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAGGAGGTTGCTAAGTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG