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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccttttgttaattctcctcttttctgatgcccttttgattaaagtacctttttttttttctgttttgaattttctcttctgggtattgttgctctctgatgttttgtgtgtgtgtgtgtgtgtgcttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCCAGTTTCAGTGATGGTGCTAAATCTTTCTTAGAAGGCCTGATTGATAACT

Basic information

species Glycine max
transcript GLYMA02G42130.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700954|gb|BW661321.1|BW661321
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|209708014|gb|BW662156.1|BW662156
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|192300374|gb|FG988821.1|FG988821
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTTCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTT-CC
EST: gi|213594177|gb|DB963774.1|DB963774
EST:     TCCNNNNNNNGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: TCCTTTTTT-GAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|254328979|gb|GR833351.1|GR833351
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|209705022|gb|BW667720.1|BW667720
EST:     TCCNNNNNNNGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: TCCTTTTTT-GAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtattgttgctctctgatgttttgtgtgtgtgtgtgtgtgtgcttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCCAGTTTCAGTGATGGTGCTAAATCTTTCTTAGAAGGCCTGATTGATAACT
             ctctgat  putative branch site (score: 4)
                                            cttcctgtt  putative PPT
                  atgtttt  TA-rich tract