1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacatctttgcatccctctatctctctattagctgcttttcttttaccattttatttgtataaagggttcatcattgctcacgtgttcgtccttaatcagAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG
species | Glycine max |
transcript | GLYMA02G41810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCAG AATCAGGGAAGCTCATCACATGGGGCTCAACAGATGGTCTAGGCCAAAGCTEST: gi|209710825|gb|BW665132.1|BW665132
genomic: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCAGgtgccttacc ... ccttaatcagAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
EST: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCAG AATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
genomic: TTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCAGgtgccttacc ... ccttaatcagAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCT
accattttatttgtataaagggttcatcattgctcacgtgttcgtccttaatcagAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG
tgctcac putative branch site (score: 2)
ttcgtcctt putative PPT
tttatttgtataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatctttgcatccctctatctctctattagctgcttttcttttaccattttatttgtataaagggttcatcattgctcacgtgttcgtccttaatcagAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -ctttgca
- - - - - - tccctct
- - - - - - - - - - - - - - -tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgtgt