1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aattttagaatttactcgattttctgttttggtggggtggggatgctagtacattggtttctcaatgtaatgttattattgttatgttttgctcttgtagGTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGTCAAAACTGGATTACCAGAGGCAAGGATAAGTTTAGGTTTCCTGGGGGTG
species | Glycine max |
transcript | GLYMA02G41770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCTAAAGGATACCGTCCCCCTATTCCGTGGCCCAGAAGCCGCGATGAG GTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGTEST: gi|51336385|gb|CO980251.1|CO980251
genomic: GGCCTAAAGGATACCGTCCCCCTATTCCGTGGCCCAGAAGCCGCGATGAGgtaccaattt ... gctcttgtagGTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGT
EST: GGCCTAAAGGATACCGTCCCCCTATTCCGTGGCCCAGAAGCCGCGATGAG GTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGT
genomic: GGCCTAAAGGATACCGTCCCCCTATTCCGTGGCCCAGAAGCCGCGATGAGgtaccaattt ... gctcttgtagGTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGT
ctagtacattggtttctcaatgtaatgttattattgttatgttttgctcttgtagGTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGTCAAAACTGGATTACCAGAGGCAAGGATAAGTTTAGGTTTCCTGGGGGTG
ttttgctctt CT-rich tract
aatgtaatgttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttagaatttactcgattttctgttttggtggggtggggatgctagtacattggtttctcaatgtaatgttattattgttatgttttgctcttgtagGTTTGGTACAATAATGTTCCTCACCCTCGTCTTGTTGAAGATAAAGGGGGTCAAAACTGGATTACCAGAGGCAAGGATAAGTTTAGGTTTCCTGGGGGTG
- - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg