1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttccttaattaatctctctttttcttcggtagatattaactattatcatgcttttaaattacctttatattacggaaaaataaatacggttgatgcgatcgggatcgcgatcgcgatcgtgatgcaattatcaagtgtcaaaatatcttgacgttaattgcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATACACGACGAGCTGATGCTGGACGGGAATCCGAGGCTGAACCTGGCGTCG
species | Glycine max |
transcript | GLYMA02G40840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAG GTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATEST: gi|16277122|gb|BI942215.1|BI942215
genomic: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAGgttccttaat ... gcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCAT
EST: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAG GTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATEST: gi|213608150|gb|DB963052.1|DB963052
genomic: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAGgttccttaat ... gcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCAT
EST: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAG GTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATEST: gi|298171934|gb|HO021526.1|HO021526
genomic: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAGgttccttaat ... gcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCAT
EST: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAG GTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCAC
genomic: TCTGTTCATTCCACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAGgttccttaat ... gcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCAT
gatcgtgatgcaattatcaagtgtcaaaatatcttgacgttaattgcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATACACGACGAGCTGATGCTGGACGGGAATCCGAGGCTGAACCTGGCGTCG
aaaatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccttaattaatctctctttttcttcggtagatattaactattatcatgcttttaaattacctttatattacggaaaaataaatacggttgatgcgatcgggatcgcgatcgcgatcgtgatgcaattatcaagtgtcaaaatatcttgacgttaattgcggttgcagGTTCAAGATGGCGGAGGAATCGATCCCGAAGGAAGCCGCGTACCAGATCATACACGACGAGCTGATGCTGGACGGGAATCCGAGGCTGAACCTGGCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA