1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaataatttttgtgtttcttactcttttttttttttttttgtttatgatatgaatctcacacattgttctgttatgtcatttcttcttcatttggctttagacaacttaaatttgagatctttattatgtttttgcttatatggtaaagtgattcttcattatttcattcttcattgattgaattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG
species | Glycine max |
transcript | GLYMA02G39230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACAEST: gi|151407473|gb|EV277288.1|EV277288
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACAEST: gi|298197456|gb|HO044935.1|HO044935
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACAEST: gi|192305128|gb|FG994678.1|FG994678
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACAEST: gi|151394272|gb|EV264143.1|EV264143
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACAEST: gi|298189379|gb|HO037782.1|HO037782
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACAEST: gi|213600296|gb|DB955878.1|DB955878
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
ttatatggtaaagtgattcttcattatttcattcttcattgattgaattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG
cattgat putative branch site (score: 4)
attcttcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttttgtgtttcttactcttttttttttttttttgtttatgatatgaatctcacacattgttctgttatgtcatttcttcttcatttggctttagacaacttaaatttgagatctttattatgtttttgcttatatggtaaagtgattcttcattatttcattcttcattgattgaattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA