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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgggggtgcattttaagtacacatgttctaacccagcaaataaattgtgtttattatggtgttttaagtctaataagcttttattggacagGCCCTTGTACTTTCAACATGATGGGCATTCAAGAACAATAGTTGGAATTCAAGTCAAATATCAACAGTCTGGAATTCCACAATACAGTCTCCTGGTTATG

Basic information

species Glycine max
transcript GLYMA02G38520.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38520.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv16s0098g00580.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtaagtgggggtgcattttaagtacacatgttctaacccagcaaataaattgtgtttatta-tggtgttttaagtctaataagcttttattggacagGCCCTTGTACTTTCAACATGATGGGCATTCAAGAACAATAGTTGGAATTCAAGTCAAATATCAACAGTCTGGAATTCCACAATACAGTCTCCTGGTTATG
                   ||| |   |   ||||   |     |  | |    ||| |  | || | ||||| | | | ||||| |   |          |  | |   |||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||| |||| |    ||| || |  |||||||  ||  |  || ||
gtaagtgactatctggaatagtagcttttttttttcttttttttttcttttttacagaattttaaatatgtttctaaattgtgttgtgctttgttgggagatccaataagcagGCCCTTGTACTTTCAGCATGATGGCCATTCGAGAACCATCGTTGGAATTCAAGTCAAACATCAGCTCAATGGGATGCATCAATACAACCTATTAATTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaataaattgtgtttattatggtgttttaagtctaataagcttttattggacagGCCCTTGTACTTTCAACATGATGGGCATTCAAGAACAATAGTTGGAATTCAAGTCAAATATCAACAGTCTGGAATTCCACAATACAGTCTCCTGGTTATG
                               gtctaat  putative branch site (score: 3)
                                         cttttatt  putative PPT
     aaattgtgtttattat  TA-rich tract