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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagatattcttgtcatgaattgatcccacaatggctagttacatgttttcaaataaaaaatgtttgtgttctgttaaatatttgtatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA

Basic information

species Glycine max
transcript GLYMA02G35990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G027378_T02 (Zea mays), 3'ss of exon 1
---gtagatattcttgtcatgaattgatccca--caatggc-tagttacatgttttcaaataaaaaatgtttgtgtt-ctgttaaatatttgtatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA
   ||   | || |||| |   ||      ||   | | |  || |   |   ||      |  |  || ||| ||  |||  |||| ||         ||||||||||||| | ||||||||  |  | |||||||| || ||||| || || || ||||| ||||| ||||| ||||||||||||||||||| ||||||||| ||
gtagttcctgtttttgtaacatataagattcatttagtagagtactagtagaattcattgcattacctgcttgcgtaactgacaaatgttaa-------aaatgcagTTCCTCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTA

upper sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
gtagatattcttgtcatgaattgatcccacaatgg-ctagttacatgttttca-aataaaaaatgtttgtgttctgttaaatatttgtatgtttaaa-tgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA
 ||| |  | || |  | ||   ||   | | ||   ||||    |  |   | |||  |     ||       |||  ||       ||| | ||| |||||||||  | ||||||||  |  | |||||||| || ||||| || || || ||||| ||||| ||||| |||||||||||||||||||  |||||||| ||
ttagttcctgtttttgtaaa---atataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA

upper sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 1
--gtagatattcttgtcatgaattgatcccacaatggctagttacatgttttca--aataaaaaatgtttgtgttctgttaaatatttgtatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA
  ||    |   | | | |  ||  ||   |       || | | |   ||| |  |||    ||  |||| |  || |||| | | || || |  |  |||||| ||| | |||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| || || |||||||||||||||||||| |||||||||||
tggtctgaagcttagcctttgat--atttaaggcgccttattcagacaattttattaattttcaagatttgcgcacttttaagtctctgcatttcca--tgcagTCCCTCGAAACTTCAGATTGCTTGAGGAACTTGAACGTGGAGAAAAGGGTATTGGAGATGGTACTGTCAGCTATGGAATGGATGATGGAGATGACATTTA

upper sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S490_20V6.1 (Physcomitrella patens), 3'ss of exon 2
gtagatattcttgtcatgaattgatcccacaatggctagttacatgttttcaaataaaaaatgtttgtgttctgtta----aatatttgt--atgtttaaat-gcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA
    | | |    ||||  | || |  ||   | ||||||   ||| |      | |     | |   |||||| |     ||  |||||  ||||| |||| | |||||||||||||||  |  | || || || |||||  | || || ||||| ||||| |||||||| || |||||||| ||||| |||||||||||| | | 
--gaagagt----tcatagaatgttgacatg-tagctagtcgtatgctgaggtttgattctcgctccagttctgatgtattaacttttgtttatgttcaaatcgtagTTCCTAGGAACTTTCGCCTTCTCGAAGAACTTGAGAGGGGAGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATT

upper sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S60_129V6.1 (Physcomitrella patens), 3'ss of exon 2
gtagatattcttgtcatgaattgatcccacaatggctagttacatgttttcaaataaaaaa-------tgtttgtgttctgttaaatatttg--tatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA
        | || |||     |||  |   |||   |  ||  || | |     | |  |        | ||| | |||| ||||||||     | | |  || |  |||||||||||||||  |  | || |||||||||||  | ||||| ||||| || || ||||||||||| |||||||| |||||||| || || ||  | | 
--------ttttttcaaatgctgaaact-taatttttgtttttatatctgatccttagtaccttcttttttttcttttcttttaaatatggaactttatacaactatagTTCCTAGGAACTTTCGTCTTCTCGAGGAGCTTGAGAGGGGTGAGAAAGGTATCGGCGATGGCACAGTGAGCTATGGCATGGATGACGGCGACGATGTATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040006|gb|BM308300.1|BM308300
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254349094|gb|GR860366.1|GR860366
EST:     GCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: GCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|4307444|gb|AI444048.1|AI444048
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|21675327|gb|BQ627688.1|BQ627688
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|27426798|gb|CA938318.1|CA938318
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|19348365|gb|BM892897.1|BM892897
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|58018614|gb|CX705356.1|CX705356
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254316764|gb|GR828301.1|GR828301
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|192315990|gb|FK007109.1|FK007109
EST:     CTTGCGCAACCCATCCATGACGTTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|15813071|gb|BI785346.1|BI785346
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGTTCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|21994159|gb|BQ785687.1|BQ785687
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|14258514|gb|BG881422.1|BG881422
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|4396099|gb|AI495096.1|AI495096
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|58024425|gb|CX711166.1|CX711166
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|12497027|gb|BG047360.1|BG047360
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|6455149|gb|AW185832.1|AW185832
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|15286664|gb|BI470555.1|BI470555
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254349093|gb|GR860365.1|GR860365
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|15286444|gb|BI470343.1|BI470343
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|6341954|gb|AW164778.1|AW164778
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|21286090|gb|BQ473961.1|BQ473961
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|15814040|gb|BI786315.1|BI786315
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|10231472|gb|BE800360.1|BE800360
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254329680|gb|GR839233.1|GR839233
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254343063|gb|GR859225.1|GR859225
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|23725959|gb|BU760954.1|BU760954
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|12773143|gb|BG238070.1|BG238070
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254327955|gb|GR834920.1|GR834920
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|254316765|gb|GR828302.1|GR828302
EST:     AGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: AGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|192315989|gb|FK007108.1|FK007108
EST:     CTTGCGCAACCCATCCATGACGTTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|9258943|gb|BE347090.1|BE347090
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|58018289|gb|CX705031.1|CX705031
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
EST: gi|213611874|gb|DB958912.1|DB958912
EST:     CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTG                         TTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA
genomic: CTTGCGCAACCCATCCATGACGCTTGGCTCAGGAGGATCCAGTGTCGTTGgtcagtgtcc ... ttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcaaataaaaaatgtttgtgttctgttaaatatttgtatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA
                        ttctgttaaatatttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagatattcttgtcatgaattgatcccacaatggctagttacatgttttcaaataaaaaatgtttgtgttctgttaaatatttgtatgtttaaatgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - catgaat
- - - - - - - - - - - - tcccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt