1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attaacatataaagtgtgttaagctttttacatttttttttgaaaggcgtgtgaagctttatacataattcatgatttcttccctccttcactttctcagGATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTGTTTGATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTG
species | Glycine max |
transcript | GLYMA02G35450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGAGACGATCATGAACCACGTGCACACTCTAATTTCCATCACACAG GATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTGEST: gi|213593004|gb|DB969858.1|DB969858
genomic: CAGCAGAGACGATCATGAACCACGTGCACACTCTAATTTCCATCACACAGgtactactca ... actttctcagGATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTG
EST: CAGCAGAGACGATCATGAACCACGTGCACACTCTAATTTCCATCACACAG GATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTG
genomic: CAGCAGAGACGATCATGAACCACGTGCACACTCTAATTTCCATCACACAGgtactactca ... actttctcagGATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTG
ggcgtgtgaagctttatacataattcatgatttcttccctccttcactttctcagGATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTGTTTGATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTG
ttcatgatttcttccc CT-rich tract
tttatacataattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaacatataaagtgtgttaagctttttacatttttttttgaaaggcgtgtgaagctttatacataattcatgatttcttccctccttcactttctcagGATCTTTTGTGTGAAGAAGACTAGAAAACCAGCTTCAATTATCGAGAATTGTTTGATGGGTTGATCAAAAATCGCTCTCCAAACCAGATTCGTAACACTG
- - - - - - -gtgtgtt
- - - - - - - - - - - - - - - - - - - - - - - gcgtgtg