1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agtatttatatgtcttgtatgcataggagggaaagtattgtaatctgctatcataaatttttggtactaagttttgattgtgctacctttttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT
species | Glycine max |
transcript | GLYMA02G34640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGT GCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAATEST: gi|7233872|gb|AW569214.1|AW569214
genomic: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGTgtgagtattt ... ttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAAT
EST: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGT GCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAATEST: gi|208293340|gb|GE090304.1|GE090304
genomic: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGTgtgagtattt ... ttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAAT
EST: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGT GCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAATEST: gi|15815084|gb|BI787359.1|BI787359
genomic: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGTgtgagtattt ... ttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAAT
EST: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGT GCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAAT
genomic: TTTGGGTATGACATCAACAAGAAGGGCACCCCTCAGGGAACCGTCAAAGTgtgagtattt ... ttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAAT
tgctatcataaatttttggtactaagttttgattgtgctacctttttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT
ttttgat putative branch site (score: 4)
tgctacctttttcttc putative PPT
ataaatttttggta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtatttatatgtcttgtatgcataggagggaaagtattgtaatctgctatcataaatttttggtactaagttttgattgtgctacctttttcttcgcagGCCTGAGTCATTAGGTATAGTTGTTGGTATTGTCTTCTTGGTTGTGGCAATCTTGTTTCAGTATTTTAACTTCACAGCAGATTCGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - gtatgca
- - - - - - - - - - - - -ggaggga
- - - - - - - - - - - - - - - - - - - - - - -tgctatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg