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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccctctctcaatttccccatttctcattccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG

Basic information

species Glycine max
transcript GLYMA02G33350.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G33350.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g71300.1 (Oryza sativa), 3'ss of exon 1
gtgagtccctctctcaatttccccatttctcattccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG
|| ||| |  |||    |   | | |    |    | |    | || ||   |   |||      |     |||  |   ||||||              ||||||||||||  ||||| |||||||| |||| ||||||||||||| |   |||| | || || ||||| |||||  ||||| | ||  | ||| | || |
gtaagtgctcctccgcctcgtctcctcctccgcctcga---gatctgatgaggggtttcgcatgct-----accgcgtggttgtgc------------gcagGTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACCAAGGCCGGCGCGCAGCGCGCCGCCGCCGCCCACGGCATCGCCCTCGTCG

upper sequence: GLYMA02G33350.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G108369_T01 (Zea mays), 3'ss of exon 1
gtgagtccctc-tctcaatttccccatttctcattccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG
|||||| |  | || |  |||| || | ||    | |  | |   |||||              ||    ||||  ||    ||| |  || |||  |   ||||||||||||  ||||| || ||||| |||||||||||||| |||||  | |||||  | || ||||| |||||  | ||| | |   | ||| | || |
gtgagtgcgccgtcgccctttctccctatcctccttctctctgggctaat--------------atgtgctgacgtgg----tgtccaatggatgctttgcagGTGCTGTACTGGCTCTCGGGTCTCACCTGCACCGACGAGAATTTCATCATAAAGTCCAGCGCCCAGCGCGCCGCCGCTGCCCACGACATCGCCCTCGTGG

upper sequence: GLYMA02G33350.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G155334_T01 (Zea mays), 3'ss of exon 1
gtgagtcc---ctctctcaatttccccatttctcattccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG----------
|||||| |     | | |    |||| ||    | | ||  | |   |||||              ||    |||| |||    |||  | || |||      ||||||||||||  ||||| |||||||| || ||||||||||| |||||  | |||           ||| |||||  ||||| | ||  | ||| | ||            
gtgagtgcgcagccaccctcgctccctatcctccctccctctctcggctaat--------------atgcgctgacgcgg----tgtcttatggatgctctgcagGTGCTGTACTGGCTCTCGGGCCTCACCTGTACCGACGAGAATTTCATCATGAAG----------GGCGCGCCGCCGCCGCCAACGGCATCGCCCTTGTCACGCCTGACAC

upper sequence: GLYMA02G33350.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G046558_T01 (Zea mays), 3'ss of exon 1
gtgagtccctctct-caatttccccatttctcattccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG
|||||| |  | |  |  |||| || | ||    | |  | |   |||||              ||    ||||  ||    ||| || || |||  |   ||||||||||||  ||||| || ||||| |||||||||||||| |||||  | ||||| || || ||||| |||||  | ||| | ||  | ||| | || |
gtgagtgcgccgccgccctttctccctatcctccttctctctgggctaat--------------atgtgctgacgtgg----tgtcctatggatgctttgcagGTGCTGTACTGGCTCTCGGGTCTCACCTGCACCGACGAGAATTTCATCATAAAGTCCGGCGCCCAGCGCGCCGCCGCTGCCCACGGCATCGCCCTCGTGG

upper sequence: GLYMA02G33350.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G41530.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgagtccctctctcaatttccccatttctc-attccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctt-tgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG
    |    | | |  ||||     |  ||  ||| |  | | |    |     ||  |  | |  |  |||        ||| | | | |   ||| | | ||||||| ||||  || ||||||||||| ||||| ||||||||||||||  |||| || || ||||| ||||| |||||  |  | ||  ||||  | ||||
--atgattgtttttggattttttattgccttgatttcgttgtgatgccaaa--acaactgattggatttttggatgaatgattctccatgttgttgattgacagGTGCTTTACTGGCTTTCTGGCCTCACCTGCACGGACGAGAACTTCATTATCAAATCAGGAGCTCAACGTGCTGCTTCTACTCACGGCATTGCTCTTGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296776|gb|FG993074.1|FG993074
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|7924639|gb|AW830665.1|AW830665
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298169342|gb|HO020702.1|HO020702
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|13251945|gb|BG362848.1|BG362848
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|9899509|gb|BE608477.1|BE608477
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|14990995|gb|BI316668.1|BI316668
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCA                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|21994919|gb|BQ786447.1|BQ786447
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|16347920|gb|BI973515.1|BI973515
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151409952|gb|EV279760.1|EV279760
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|58017950|gb|CX704692.1|CX704692
EST:     TCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: TCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151409483|gb|EV279291.1|EV279291
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|33390499|gb|CA853694.1|CA853694
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|193629440|gb|FK574916.1|FK574916
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTC
EST: gi|12774209|gb|BG239136.1|BG239136
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298198180|gb|HO039719.1|HO039719
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCGCCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151396504|gb|EV266381.1|EV266381
EST:     ACTTCCGCATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151404093|gb|EV273903.1|EV273903
EST:     ACTTCCACATCTACTTCCCTCCATCCCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298171089|gb|HO016121.1|HO016121
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298191019|gb|HO038498.1|HO038498
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|208263915|gb|GE061627.1|GE061627
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298166560|gb|HO009999.1|HO009999
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|192298137|gb|FG991417.1|FG991417
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298193463|gb|HO033897.1|HO033897
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298178548|gb|HO024283.1|HO024283
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|192314972|gb|FK010790.1|FK010790
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTCAAGTCGGGTGCTCAGCGTGCCGCTTCCGCCGAGGGTGTTGCCTTGGTTG
                   gattgac  putative branch site (score: 3)
                                       tttgaatgaataata  TA-rich tract