1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtttttttttttttctctttcttaattaattgccctttttatttgttttttcatttccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG
species | Glycine max |
transcript | GLYMA02G33320.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACEST: gi|193472539|gb|FK434924.1|FK434924
genomic: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCC-TTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: GCAACCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACEST: gi|193547133|gb|FK502428.1|FK502428
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACEST: gi|193340282|gb|FK305789.1|FK305789
genomic: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGEST: gi|208160056|gb|GD957036.1|GD957036
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAAATACTTAATACATATTATCCGAAEST: gi|193370158|gb|FK336734.1|FK336734
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTA-T-CATATTATCCGAA
EST: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACEST: gi|193721750|gb|FK658234.1|FK658234
genomic: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTT-AAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACEST: gi|208339258|gb|GE138936.1|GE138936
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT GTCGCAGCCACGCGATCAGCTGCTGAAG
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAG
tttctctttcttaattaattgccctttttatttgttttttcatttccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG
aattaat putative branch site (score: 3)
ttgccctttttatttg CT-rich tract
tttttatttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttttttttttctctttcttaattaattgccctttttatttgttttttcatttccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA