Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttttttttttctctttcttaattaattgccctttttatttgttttttcatttccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG

Basic information

species Glycine max
transcript GLYMA02G33320.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600861|gb|DB968825.1|DB968825
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|193311596|gb|FK278082.1|FK278082
EST:     CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCC-TTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|213590361|gb|DB971523.1|DB971523
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|31561930|gb|CD487768.1|CD487768
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|209710522|gb|BW662058.1|BW662058
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|7639460|gb|AW733782.1|AW733782
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|193472539|gb|FK434924.1|FK434924
EST:     GCAACCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|192334661|gb|FK025880.1|FK025880
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|10255267|gb|BE823033.1|BE823033
EST:     CACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: CACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|193547133|gb|FK502428.1|FK502428
EST:     CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|17023100|gb|BM094134.1|BM094134
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|46492865|gb|CN472421.1|CN472421
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|192334662|gb|FK025881.1|FK025881
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|214006081|gb|DB986005.1|DB986005
EST:     ATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTTTCAG-CAGCGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAA
genomic: ATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCA-CGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAA
EST: gi|298170437|gb|HO019061.1|HO019061
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|193340282|gb|FK305789.1|FK305789
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAG
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|192314746|gb|FK005986.1|FK005986
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|208160056|gb|GD957036.1|GD957036
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAAATACTTAATACATATTATCCGAA
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTA-T-CATATTATCCGAA
EST: gi|209713426|gb|BW679241.1|BW679241
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|193370158|gb|FK336734.1|FK336734
EST:     CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: CAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTT-AAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|209722595|gb|BW679844.1|BW679844
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|192314745|gb|FK005985.1|FK005985
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|209706732|gb|BW676046.1|BW676046
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|193721750|gb|FK658234.1|FK658234
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|209703489|gb|BW683350.1|BW683350
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|209706733|gb|BW676047.1|BW676047
EST:     ATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: ATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|209722594|gb|BW679843.1|BW679843
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
EST: gi|208339258|gb|GE138936.1|GE138936
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAG
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAG
EST: gi|6915982|gb|AW397512.1|AW397512
EST:     GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCT                         GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC
genomic: GCAATCCATTTCTCAATCTCACTGTTGATGGTTTCCTTAAGATCGGAGCTgtaagttttt ... ccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctttcttaattaattgccctttttatttgttttttcatttccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG
            aattaat  putative branch site (score: 3)
                  ttgccctttttatttg  CT-rich tract
                        tttttatttgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttttttttttttctctttcttaattaattgccctttttatttgttttttcatttccaatttcagGTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCGAAACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA