1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttgtttttaattgattgattgattgattaattgattaattaatgataattgctattatgaggttttgattttttgttggtggttttgtggtgttctcagGCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGGATGAACAGGGTGGTGGCTGAACTGCTGTGGCTGGAGCTCGTTTGGATTA
species | Glycine max |
transcript | GLYMA02G31320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAG GCAATATGCTACGTEST: gi|19348278|gb|BM892810.1|BM892810
genomic: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAGgtcaccccat ... gtgttctcagGCAATATGCTACGT
EST: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAG GCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGGEST: gi|208222106|gb|GE017772.1|GE017772
genomic: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAGgtcaccccat ... gtgttctcagGCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGG
EST: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAG GCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGGEST: gi|13791554|gb|BG654145.1|BG654145
genomic: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAGgtcaccccat ... gtgttctcagGCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGG
EST: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAG GCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGG
genomic: CATTGGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAACCTCATTCAGgtcaccccat ... gtgttctcagGCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGG
ataattgctattatgaggttttgattttttgttggtggttttgtggtgttctcagGCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGGATGAACAGGGTGGTGGCTGAACTGCTGTGGCTGGAGCTCGTTTGGATTA
ttttgat putative branch site (score: 4)
tgttctc putative PPT
ttttgattttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtttttaattgattgattgattgattaattgattaattaatgataattgctattatgaggttttgattttttgttggtggttttgtggtgttctcagGCAATATGCTACGTGGTTGTGCGGCCGGTGTCAAAGAATTTGTACCGGCGGATGAACAGGGTGGTGGCTGAACTGCTGTGGCTGGAGCTCGTTTGGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtt