1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatacatccatcgcttccacttcaaataattgaatcacgtttttgccattctagaacaacatacatatagaaagttcctcttttttttttatgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG
species | Glycine max |
transcript | GLYMA02G16860.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAG GGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTEST: gi|192334194|gb|FK026575.1|FK026575
genomic: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGgtatacatcc ... atgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACT
EST: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAG GGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTEST: gi|208095582|gb|GD896246.1|GD896246
genomic: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGgtatacatcc ... atgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACT
EST: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAG GGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTEST: gi|298179338|gb|HO027809.1|HO027809
genomic: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGgtatacatcc ... atgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACT
EST: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAG GGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACT
genomic: TGCTGTTTGAGTGCCGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGgtatacatcc ... atgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACT
ccattctagaacaacatacatatagaaagttcctcttttttttttatgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG
ttcctctttttttttt CT-rich tract
tcttttttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacatccatcgcttccacttcaaataattgaatcacgtttttgccattctagaacaacatacatatagaaagttcctcttttttttttatgggtacagGGATGCTGAAATTCTTAAATCCGTTACAAGGGTCAACCAGTTGAAGGAACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA