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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatctttaaatttaattcttttttcgtattagacatattcatgttgtctggatttagctacttgcattgattaaaatcaataaatgttgtgaattccaatcaccatgtcgagattttatcgtggaataatcagGAAATTGTGAGTGCCGGAGGGCGCACGGTGTGGGGAAATCCTGCAGAAGTAGGGAGTGTTGTAGGAGGGGAAGTGTTTGATGTGGTCTTGGACAACAATG

Basic information

species Glycine max
transcript GLYMA02G16620.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986800|gb|BE660908.1|BE660908
EST:     GTGAAGAAGGCTCCGACAAGATGAAGAAACCTCCTTTCAACAGATTCTCA                         GAAATTGTGAGTGCCGGAGGGCGCACGGTGTGGGGAAATCCTGCAGAAGTA
genomic: GTGAAGAAGGCTCCGACAAGATGAAGAAACCTCCTTTCAACAGATTCTCAgtatgtgatc ... gaataatcagGAAATTGTGAGTGCCGGAGGGCGCACGGTGTGGGGAAATCCTGCAGAAGTA
EST: gi|15284972|gb|BI468863.1|BI468863
EST:     GTGAAGAAGGCTCCGACAAGATGAAGAAACCTCCTTTCAACAGATTCTCA                         GAAATTGTGAGTGCCGGAGGGCGCACGGTGTGGGGAAATCCTGCAGAAGTA
genomic: GTGAAGAAGGCTCCGACAAGATGAAGAAACCTCCTTTCAACAGATTCTCAgtatgtgatc ... gaataatcagGAAATTGTGAGTGCCGGAGGGCGCACGGTGTGGGGAAATCCTGCAGAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaatgttgtgaattccaatcaccatgtcgagattttatcgtggaataatcagGAAATTGTGAGTGCCGGAGGGCGCACGGTGTGGGGAAATCCTGCAGAAGTAGGGAGTGTTGTAGGAGGGGAAGTGTTTGATGTGGTCTTGGACAACAATG
                                agattttat  TA-rich tract