1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttctcactgtgttcattgatcctgctgttcagtttttgttcctttctaaacgcattcaaatgtttttctttatcttgtcattttgtcttttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAATTTTCTCATGAATTTGAAGAAAGTAATGGTTTCGGATGGAGATATGAC
species | Glycine max |
transcript | GLYMA02G16010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAAC CTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAEST: gi|16106218|gb|BI893958.1|BI893958
genomic: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACgtgagtttcc ... ttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAA
EST: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAAC CTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAEST: gi|15285091|gb|BI468982.1|BI468982
genomic: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACgtgagtttcc ... ttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAA
EST: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAAC CTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAEST: gi|10235222|gb|BE804169.1|BE804169
genomic: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACgtgagtttcc ... ttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAA
EST: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAAC CTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAA
genomic: CTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACgtgagtttcc ... ttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAA
tctaaacgcattcaaatgtttttctttatcttgtcattttgtcttttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAATTTTCTCATGAATTTGAAGAAAGTAATGGTTTCGGATGGAGATATGAC
ttctaaa putative branch site (score: 2)
tgtttttctttatctt putative PPT
aaatgtttttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctcactgtgttcattgatcctgctgttcagtttttgttcctttctaaacgcattcaaatgtttttctttatcttgtcattttgtcttttccttgcagCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAATTTTCTCATGAATTTGAAGAAAGTAATGGTTTCGGATGGAGATATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT