Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctattccatttcggatctcaattttccattcaaaagcattttttctttcttctgtatttttcgatttcactgttactatgtgaagcacgactagaatcgaatataataggttagttagggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG

Basic information

species Glycine max
transcript GLYMA02G15540.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440335|gb|BE440841.1|BE440841
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|208229771|gb|GE026094.1|GE026094
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|13181092|gb|BG352432.1|BG352432
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCC
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|193661901|gb|FK602687.1|FK602687
EST:     ACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGA-TGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: ACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298163443|gb|HO012176.1|HO012176
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|17519610|gb|BM188652.1|BM188652
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298167322|gb|HO010761.1|HO010761
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298199552|gb|HO042915.1|HO042915
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCTATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|193624115|gb|FK576053.1|FK576053
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|208170435|gb|GD969670.1|GD969670
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGG
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGG
EST: gi|192332058|gb|FK026338.1|FK026338
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151397361|gb|EV267234.1|EV267234
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTCGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192297819|gb|FG988317.1|FG988317
EST:     CACCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|193639828|gb|FK587105.1|FK587105
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151394659|gb|EV264530.1|EV264530
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192330489|gb|FK022662.1|FK022662
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCTA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298194670|gb|HO043142.1|HO043142
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTGCGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298192558|gb|HO036640.1|HO036640
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|15203957|gb|BI426734.1|BI426734
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|208103487|gb|GD903114.1|GD903114
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298176175|gb|HO015580.1|HO015580
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|120492950|gb|EH221117.1|EH221117
EST:     AGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: AGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151411054|gb|EV280865.1|EV280865
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298199406|gb|HO042769.1|HO042769
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|105632136|gb|DW246331.1|DW246331
EST:     ACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: ACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|207796817|gb|GD768879.1|GD768879
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAA
EST: gi|298174830|gb|HO017939.1|HO017939
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151408591|gb|EV278399.1|EV278399
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298182792|gb|HO031527.1|HO031527
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCGATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298166885|gb|HO010324.1|HO010324
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192331291|gb|FK021002.1|FK021002
EST:     CGCCTCGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGAGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192332059|gb|FK026339.1|FK026339
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|209696839|gb|BW680461.1|BW680461
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298197039|gb|HO041726.1|HO041726
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|120493042|gb|EH221209.1|EH221209
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG
                                        aaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctattccatttcggatctcaattttccattcaaaagcattttttctttcttctgtatttttcgatttcactgttactatgtgaagcacgactagaatcgaatataataggttagttagggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA