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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttctctcgttttctcgggaaaaccgcgggatctgtgttctgcgtgacgcgattccacgatttccactaatttttcggtctgaaattgcgattttttgttcttcgtttttgttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGATCCGGTGGCGCAGACG

Basic information

species Glycine max
transcript GLYMA02G11960.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811753|gb|BQ296231.1|BQ296231
EST:     CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|15814866|gb|BI787141.1|BI787141
EST:     CTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|16346362|gb|BI971957.1|BI971957
EST:     CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|23052679|gb|BU577171.1|BU577171
EST:     CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|4305531|gb|AI443775.1|AI443775
EST:     CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|23057292|gb|BU577966.1|BU577966
EST:     TCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: TCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|23053063|gb|BU577554.1|BU577554
EST:     CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
EST: gi|14258749|gb|BG881657.1|BG881657
EST:     CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCG                         GGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT
genomic: CCACACTTTCAATTGCATTTCTCTCTCTTTCTCACAATTTCCACTTTCCGgtaagatttt ... gttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaatttttcggtctgaaattgcgattttttgttcttcgtttttgttttgttagGGTTTTCGATTCGATATTCGTTGTTCCAATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGATCCGGTGGCGCAGACG
 cactaat  putative branch site (score: 2)
                          ttttttgttcttcgtt  putative PPT
                                        tttttgttttgtta  TA-rich tract