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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaacaatgtggatattgttgccttgattttaccacctaaacatgtttactatcatgggttggatttgtggagtgatgcttttgttttttttgttgtagTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAA

Basic information

species Glycine max
transcript GLYMA02G11300.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11300.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G26110.2 (Arabidopsis thaliana), 3'ss of exon 1
tgcaacaatgtggatattgttgccttgattttaccacctaaacatgtttactatc-atgggttggatttgtggagtgatgcttttgttttttttgt-tgtagTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAA
        | | || | | |||  ||||   ||  |  | |   | |      || ||| | | |||||  |   |||| | |    |||| |||| |||||| ||||| |||||||| |||||||||||||| ||||| |||||| | |||||| ||||||| ||||| ||||| ||| | |||||||| ||||| |||||
-attgatgtcttgaaactattgg-ttgagcataaaagatcagtgtttaagtggtcgatgaggtagattttggttctgatccctgaacttttgttgtgtgtagTTCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttactatcatgggttggatttgtggagtgatgcttttgttttttttgttgtagTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAA
                                  cttttgttttttttgt  CT-rich tract
                                   ttttgttttttttgtt  TA-rich tract