1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttttcatcttctctgatctgcatcgttgctattgccttctaaatttctgcattattattttaatttgtgcaaaagaaaatgttcacacccttgtttttgttttctctgtattgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAG
species | Glycine max |
transcript | GLYMA02G10640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|23727600|gb|BU761836.1|BU761836
genomic: TGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|19052973|gb|BM731640.1|BM731640
genomic: TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: CCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|192315263|gb|FK007721.1|FK007721
genomic: CCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTTAATTTTTTGTCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|193570947|gb|FK529966.1|FK529966
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: GCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|298192845|gb|HO033279.1|HO033279
genomic: GCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|58015388|gb|CX702130.1|CX702130
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TACCGCCGTGGTGGCCGCCGAAG AAAGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|13791520|gb|BG654111.1|BG654111
genomic: TACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|10847035|gb|BF069805.1|BF069805
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: CTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|58025133|gb|CX711874.1|CX711874
genomic: CTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: CGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|58018364|gb|CX705106.1|CX705106
genomic: CGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|19268713|gb|BM884969.1|BM884969
genomic: TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|192301564|gb|FG994776.1|FG994776
genomic: CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|58015707|gb|CX702449.1|CX702449
genomic: TTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: GTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATTTTCGACTCACCATGAAGCEST: gi|9902219|gb|BE611187.1|BE611187
genomic: GTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|298187789|gb|HO031746.1|HO031746
genomic: CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
gtgcaaaagaaaatgttcacacccttgtttttgttttctctgtattgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAG
ttgcttc CT-rich tract
tttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttcatcttctctgatctgcatcgttgctattgccttctaaatttctgcattattattttaatttgtgcaaaagaaaatgttcacacccttgtttttgttttctctgtattgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC