1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgccatggaagtggagagaaacaagattagtatagggattgtcttgttcaaaacaagatttggctgtgtttactgaatattcatcatttatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG
species | Glycine max |
transcript | GLYMA02G10170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|9264513|gb|BE352660.1|BE352660
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|19347448|gb|BM892328.1|BM892328
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|7146747|gb|AW508669.1|AW508669
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|209721507|gb|BW671687.1|BW671687
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|26058684|gb|CA801598.1|CA801598
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|14125829|gb|BG790267.1|BG790267
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|209700254|gb|BW664479.1|BW664479
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|21479734|gb|BQ576417.1|BQ576417
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TTTTCTCTCGCTCTCTGCCTTCCATCACCCTCGCCATTTCCCTTCCCAAG ATAGTAGAAGATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|13181560|gb|BG352900.1|BG352900
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|7232232|gb|AW567589.1|AW567589
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|26058538|gb|CA801452.1|CA801452
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|209717612|gb|BW679692.1|BW679692
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|7030276|gb|AW460059.1|AW460059
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|8283152|gb|BE020713.1|BE020713
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCAATTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|8282939|gb|BE020500.1|BE020500
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCAATTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|13181648|gb|BG352988.1|BG352988
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAA-ATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|192326949|gb|FK019226.1|FK019226
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213599164|gb|DB962243.1|DB962243
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213599862|gb|DB973906.1|DB973906
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|24135382|gb|BU925883.1|BU925883
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|24136171|gb|BU926681.1|BU926681
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213594404|gb|DB967988.1|DB967988
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|12496498|gb|BG047094.1|BG047094
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: CACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACACTCTTGTTTGTGACAEST: gi|17023480|gb|BM094514.1|BM094514
genomic: CACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAAC-CTCTTGTTTGTGACA
EST: TTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|151400375|gb|EV270189.1|EV270189
genomic: TTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|12772028|gb|BG236955.1|BG236955
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTT-CATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213613943|gb|DB960936.1|DB960936
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213589283|gb|DB967762.1|DB967762
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|7686433|gb|AW757081.1|AW757081
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|209701316|gb|BW655911.1|BW655911
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|209698678|gb|BW652479.1|BW652479
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|15812971|gb|BI785246.1|BI785246
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213600758|gb|DB968806.1|DB968806
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|27426342|gb|CA937862.1|CA937862
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|209701528|gb|BW667349.1|BW667349
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|213587909|gb|DB971398.1|DB971398
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|42722420|gb|CK768322.1|CK768322
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAAEST: gi|15286966|gb|BI470857.1|BI470857
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
ttgttcaaaacaagatttggctgtgtttactgaatattcatcatttatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG
tttatcct CT-rich tract
aatattcatcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgccatggaagtggagagaaacaagattagtatagggattgtcttgttcaaaacaagatttggctgtgtttactgaatattcatcatttatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
tatgcca
- - - - - - -tggagag
- - - - - - - - - - - - - - - - - - gggattg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt