1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgcctttacatttgtggtgctgctttatgctaatgttttggttgaaaaatgttctttggtttataaaattcttataatttctgattcgtggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACT
species | Glycine max |
transcript | GLYMA02G10060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGTGTTGTCAGTGTTGGATCTTGGCGTAGTCAAGATAAGCAGAGAAG ATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAEST: gi|7925099|gb|AW831125.1|AW831125
genomic: GCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAGgtactctggg ... ggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAA
EST: GCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAG ATGTGGTGAGGGAEST: gi|18040970|gb|BM309264.1|BM309264
genomic: GCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAGgtactctggg ... ggtgttatagATGTGGTGAGGGA
EST: GCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAG ATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAA
genomic: GCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAGgtactctggg ... ggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAA
aaaaatgttctttggtttataaaattcttataatttctgattcgtggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACT
ttctgat putative branch site (score: 3)
ttctttggtttataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcctttacatttgtggtgctgctttatgctaatgttttggttgaaaaatgttctttggtttataaaattcttataatttctgattcgtggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
-tgccttt
- - - - - - -tgtggtg
- - - - - - - - - - - - tttatgc
- - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattc