1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttccctgtttgtgcttttccctatctatgttctgatacttttatttcttaataactaagcattgaagctggatttaaattaaagttttgttgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGTTTTCCATTAAGTGGAGTTATTCACATTAAACTCTTGGGCTGTTAGTGC
species | Glycine max |
transcript | GLYMA02G09030.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATG CTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGEST: gi|208147754|gb|GD951035.1|GD951035
genomic: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATGgtgagtttct ... tgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATG
EST: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATG CTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGEST: gi|209724879|gb|BW669568.1|BW669568
genomic: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATGgtgagtttct ... tgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATG
EST: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATG CTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGEST: gi|213597878|gb|DB958259.1|DB958259
genomic: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATGgtgagtttct ... tgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATG
EST: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATG CTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGEST: gi|193415044|gb|FK377050.1|FK377050
genomic: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATGgtgagtttct ... tgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATG
EST: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATG CTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATG
genomic: GAACGAGAAAACACAGAGAGAAACAAAACATTGCTTCTTTGAACTTGATGgtgagtttct ... tgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATG
tcttaataactaagcattgaagctggatttaaattaaagttttgttgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGTTTTCCATTAAGTGGAGTTATTCACATTAAACTCTTGGGCTGTTAGTGC
ttttgtt CT-rich tract
atttaaattaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccctgtttgtgcttttccctatctatgttctgatacttttatttcttaataactaagcattgaagctggatttaaattaaagttttgttgatttgcagCTCTTTGCACTGCTAATACTTGTGAGTTGTGATATCTTGATTAGAGGAATGTTTTCCATTAAGTGGAGTTATTCACATTAAACTCTTGGGCTGTTAGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
ttccctg
- - - -tttgtgc
- - - - - - - - - ccctatc
- - - - - - - - - - - - - - - -ctgatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa