Sequence
atgc intronic sequence ATGC exonic sequencegtgagactttcattatcttctatcctgtgttcaagatatattttagagaactggtccatgcatgagagatataaattttgtactagaatgcatgatcatgttttgatttttttattgactcttgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG
Basic information
species | Glycine max |
transcript | GLYMA02G09030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G09030.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0072g00630.t01 (Vitis vinifera), 3'ss of exon 1
gtgagactttcattatcttctatcctgtgttcaagatatattttagagaactggtccatgcatgagagatataaattttgtactagaatgcatgatcatgttttgatttttttattgactcttgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG
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--------cttaaaggctcatgtgtt-tgttgaaaaga-------aagaatttcccattatattggggat---------gggctatgat---tgacctagttctggtttgtttgttg--------tttacagccagGGCCTCGGGATGGAACCATTCAGTGCTTCATTAAGAGGGACAAGTCCAACTTGACTTACCACCTTTTCCTTTGCCTTAGCCCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26057345|gb|CA800259.1|CA800259EST: CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAG CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
genomic: CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGgtgagacttt ... tgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtactagaatgcatgatcatgttttgatttttttattgactcttgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG
tattgac putative branch site (score: 2)
ctcttgtttt CT-rich tract
atcatgttttgatttt TA-rich tract