1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgatttgtaatattgtttatcaaaagcctcccaggtcatctttatactagataattgtgtgcaatgcgaaacagtgaaagtgtctgtttgttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGGTGACTGGGACACCGGGGACAGGAAAGACAACCATGTGCACTGCTCTAG
species | Glycine max |
transcript | GLYMA02G08350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGACTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|193698147|gb|FK636698.1|FK636698
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|298172882|gb|HO019866.1|HO019866
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|298189345|gb|HO037748.1|HO037748
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|209726552|gb|BW662866.1|BW662866
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|298167337|gb|HO010776.1|HO010776
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|298177390|gb|HO027171.1|HO027171
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGGCATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGEST: gi|7684843|gb|AW755491.1|AW755491
genomic: TGAGGAAGCTGCCTCAGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
EST: AGCGACGCCGTTGCGATTCAGCCTCTGACATTACC GTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
genomic: AGCGACGCCGTTGCGATTCAGCCTCTGACATTACCgtaagttcac ... gttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTG
tactagataattgtgtgcaatgcgaaacagtgaaagtgtctgtttgttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGGTGACTGGGACACCGGGGACAGGAAAGACAACCATGTGCACTGCTCTAG
ataattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttgtaatattgtttatcaaaagcctcccaggtcatctttatactagataattgtgtgcaatgcgaaacagtgaaagtgtctgtttgttgctgtagGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAGCCAAACATTCTGGTGACTGGGACACCGGGGACAGGAAAGACAACCATGTGCACTGCTCTAG
-tgatttg
- - - - - - - - - - - - - -cctccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc