Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatgtttgtttcactctatcttttatcctgcttagaggctgttggtgcaatttaacattttggtggatttattttgtgttgctggtgatttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG

Basic information

species Glycine max
transcript GLYMA02G08010.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08010.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 1
-gctatgtttgtttcactc-tatcttttatcctg-cttagaggctgttggtgcaatttaacattttggtggatttattttgtgttgctggtgatttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG
 | ||| ||   |||| |   ||  ||  || || |||  | ||  ||  ||  |  |   |||| |    | |||||||||        || || || | | |||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| || || ||||| 
tgttatattatcttcaataacatgcttagtcttgtcttttatgcgatttatgacaagtctgatttagtatcacttattttgt-----caatg-ttcctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326526|gb|AW620324.1|AW620324
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|11687403|gb|BF595079.1|BF595079
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|9565360|gb|BE474869.1|BE474869
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|18041218|gb|BM309512.1|BM309512
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|15662834|gb|BI700205.1|BI700205
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|151412337|gb|EV282149.1|EV282149
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|17401526|gb|BM178308.1|BM178308
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|151403487|gb|EV273297.1|EV273297
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|193675986|gb|FK617816.1|FK617816
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACA
EST: gi|208171065|gb|GD969320.1|GD969320
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTA--G                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAA
EST: gi|298194936|gb|HO043408.1|HO043408
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAGCACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298193383|gb|HO033817.1|HO033817
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGATACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|17023729|gb|BM094763.1|BM094763
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|15203071|gb|BI425839.1|BI425839
EST:     TCGAAGAACGACAAGCTCG-GTACTCTAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298187089|gb|HO034238.1|HO034238
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAGGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298189597|gb|HO038000.1|HO038000
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298183125|gb|HO028388.1|HO028388
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298176584|gb|HO023171.1|HO023171
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|209726130|gb|BW675305.1|BW675305
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|120495839|gb|EH224006.1|EH224006
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|192316836|gb|FK006077.1|FK006077
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|120531368|gb|EH259501.1|EH259501
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|4313775|gb|AI460894.1|AI460894
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|21995195|gb|BQ786723.1|BQ786723
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298180864|gb|HO022303.1|HO022303
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|207794720|gb|GD764807.1|GD764807
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCGCCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|120496028|gb|EH224195.1|EH224195
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|192316837|gb|FK006078.1|FK006078
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|16347369|gb|BI972964.1|BI972964
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|16996513|gb|BM085885.1|BM085885
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|207737813|gb|GD716501.1|GD716501
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCT
EST: gi|298181032|gb|HO022471.1|HO022471
EST:     -CGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTCCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|193645358|gb|FK587932.1|FK587932
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGT
EST: gi|9899538|gb|BE608506.1|BE608506
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|254324772|gb|GR834197.1|GR834197
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298164570|gb|HO014215.1|HO014215
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|193526773|gb|FK487127.1|FK487127
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACA
EST: gi|213588418|gb|DB959738.1|DB959738
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|11687361|gb|BF595037.1|BF595037
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|208290760|gb|GE083132.1|GE083132
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAA-                         C-GCACAAGTTTG
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTG
EST: gi|192323024|gb|FK016755.1|FK016755
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|254324093|gb|GR840518.1|GR840518
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298168114|gb|HO013377.1|HO013377
EST:     TCGAAGAACGACAAGCTCGTGGACTCAAAACCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|19453543|gb|BM954953.1|BM954953
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298176568|gb|HO023155.1|HO023155
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298196163|gb|HO044554.1|HO044554
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|8285169|gb|BE022728.1|BE022728
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|6341462|gb|AW164286.1|AW164286
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|192322879|gb|FK014810.1|FK014810
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298196429|gb|HO041172.1|HO041172
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|6482757|gb|AW201979.1|AW201979
EST:     CAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: CAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|10848096|gb|BF070649.1|BF070649
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|298174013|gb|HO017349.1|HO017349
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCGCCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
EST: gi|151410799|gb|EV280614.1|EV280614
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA-                         -AGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... tttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgcaatttaacattttggtggatttattttgtgttgctggtgatttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG
      atttaac  putative branch site (score: 3)
                                             tttctatt  putative PPT
     aatttaacatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctatgtttgtttcactctatcttttatcctgcttagaggctgttggtgcaatttaacattttggtggatttattttgtgttgctggtgatttctattagCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - tgtttgt
- - - - - - -cactcta
- - - - - - - - - - - - - -tcctgct
- - - - - - - - - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct