1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtgcttttatgaatctgttgctgaagaaagggtttgtttggatagatttagaatgttggtggtggtcttgttttcaaatgttttgtttgatctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACGATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAA
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|207734461|gb|GD709668.1|GD709668
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209718245|gb|BW657850.1|BW657850
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|192299740|gb|FG987785.1|FG987785
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209700023|gb|BW656204.1|BW656204
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209728113|gb|BW655348.1|BW655348
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|209721609|gb|BW671736.1|BW671736
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGEST: gi|26045600|gb|CA783137.1|CA783137
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
EST: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATG GGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
genomic: CGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGgtaacgatca ... tctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACG
atttagaatgttggtggtggtcttgttttcaaatgttttgtttgatctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACGATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAA
atctgat putative branch site (score: 4)
ttttcaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttttatgaatctgttgctgaagaaagggtttgtttggatagatttagaatgttggtggtggtcttgttttcaaatgttttgtttgatctgattcagGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACGATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-tgctttt
- - - - - - - ctgttgc
- - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg