Sequence
atgc intronic sequence ATGC exonic sequencegtaagtactacttcaattcattaattctctctctattttttttcttttttattttgttttctctcaatttgatgacataggattgatatgatatcatcaatcatctttcattgtcacttgtgggtggttacttgttattcattgatctgaatttgttgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTA
Basic information
species | Glycine max |
transcript | GLYMA02G07760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07760.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtactacttcaattcattaattctctctctattttttttcttttttattttgttttctctcaatttgatgacataggattgatatgatatcatcaatcatctttcattgtcacttgtgggtggttacttgttattcattgatctgaatttgttgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTA
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-------------------------------------------------------gtaatctctctctctatct-------ttctctgtgagttctttggt--tttttggatttggtatttggggcgttattt-ctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37994292|gb|CF806038.1|CF806038EST: TGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGACTTGCCCA AGAAAGCAAATATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATA
genomic: TGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGACTTGCCCAgtaagtacta ... tgttgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattgtcacttgtgggtggttacttgttattcattgatctgaatttgttgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTA
cattgat putative branch site (score: 4)
ttattcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtactacttcaattcattaattctctctctattttttttcttttttattttgttttctctcaatttgatgacataggattgatatgatatcatcaatcatctttcattgtcacttgtgggtggttacttgttattcattgatctgaatttgttgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA