1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaccttgatgttgaagtcaaaacacacagtcatggaccttttttttaaaaccttgatcaacgttttttctgtggtggtaaaatttttatggtgttgcagATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAATCTTTGATTTCTCTATTGGATAAAGCAGAGAGTGTTGTTCCTCGGGAAT
species | Glycine max |
transcript | GLYMA02G07690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAACTTGGATCTCGTCCACATCGGGAAGGACCTCGAGCTTTTCGTTCAG ATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAAEST: gi|120530322|gb|EH258455.1|EH258455
genomic: GGAACTTGGATCTCGTCCACATCGGGAAGGACCTCGAGCTTTTCGTTCAGgtgactcaaa ... ggtgttgcagATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAA
EST: GGAACTTGGATCTCGTCCACATCGGGAAGGACCTCGAGCTTTTCGTTCAG ATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAAEST: gi|213599985|gb|DB966473.1|DB966473
genomic: GGAACTTGGATCTCGTCCACATCGGGAAGGACCTCGAGCTTTTCGTTCAGgtgactcaaa ... ggtgttgcagATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAA
EST: GGAACTTGGATCTCGTCCACATCGGGAAGGACCTCGAGCTTTTCGTTCAG ATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCA
genomic: GGAACTTGGATCTCGTCCACATCGGGAAGGACCTCGAGCTTTTCGTTCAGgtgactcaaa ... ggtgttgcagATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCA
ttaaaaccttgatcaacgttttttctgtggtggtaaaatttttatggtgttgcagATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAATCTTTGATTTCTCTATTGGATAAAGCAGAGAGTGTTGTTCCTCGGGAAT
ccttgat putative branch site (score: 5)
tggtaaaatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaccttgatgttgaagtcaaaacacacagtcatggaccttttttttaaaaccttgatcaacgttttttctgtggtggtaaaatttttatggtgttgcagATTAAACCTGGTTTGAGTGCTTATGCTCAGAATCCACGACAGGCAGCTGAATCTTTGATTTCTCTATTGGATAAAGCAGAGAGTGTTGTTCCTCGGGAAT
- - - -gatgttg
- - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - -catggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt