1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtaactatatatgtgtgctaatgctatgctaatatgatatgatatataaagtaattgagactgttataaaaaaaaatcataatactcatgcaattttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTA
species | Glycine max |
transcript | GLYMA02G07610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|213601484|gb|DB970414.1|DB970414
genomic: CAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|7693504|gb|AW761596.1|AW761596
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|9900707|gb|BE609675.1|BE609675
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGTTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|7283319|gb|AW595927.1|AW595927
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|17153838|gb|BM143771.1|BM143771
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|19452715|gb|BM954125.1|BM954125
genomic: ACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|8827506|gb|BE211236.1|BE211236
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|22524132|gb|BU082943.1|BU082943
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|10846099|gb|BF071249.1|BF071249
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|10709298|gb|BF009022.1|BF009022
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|11688424|gb|BF596100.1|BF596100
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: TACCTCAATGGTGGTTCTGAGATTCAGCCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|14990653|gb|BI316326.1|BI316326
genomic: TACCTCAATGGTGGTTCTGAGATTCAGC-TTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTEST: gi|151406547|gb|EV276362.1|EV276362
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
aagtaattgagactgttataaaaaaaaatcataatactcatgcaattttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTA
ttataaaaaaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaactatatatgtgtgctaatgctatgctaatatgatatgatatataaagtaattgagactgttataaaaaaaaatcataatactcatgcaattttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGTACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG