Sequence
atgc intronic sequence ATGC exonic sequencegtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
Basic information
species | Glycine max |
transcript | GLYMA02G07260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 1
gtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
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gtaagcatcctccccgcct-----tccttccttccttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcc-----cgcagTTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG
upper sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 1
gtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
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gtaagagatccccttttccg-acccctctccctctcactctcccgccggaatttagt-tctcgcgtcgcctcaccgtatccg-ccatctgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTTCTCGCCCTCAGCGACGACCTCGTCAAG
upper sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G177912_T02 (Zea mays), 3'ss of exon 1
------------------gtaagtactctctctctctacacatc----actttttttttataac-caacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
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gtaatcctgtcgcttctcctcctccctccttccctccaatcgccggaaacgaatcatctagaacacaaggctggcctcgcctcgcctgacctgacctccttccgctcctgccgcgcagTTCAACGTCCCGGACCTCCGCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAG
upper sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 1
gtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgc-ctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
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-----------------------gtaagcgatcccctccgacccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG
upper sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtactctctct-ctctacacatcacttttttt--ttataaccaacgaccaccgcgcctcttacttttc-ctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
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gtacgccatccccgtatttttctcatctctctccataattcaaatatttcattttcttgttactagcttctctctcttttttttgtttgtcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTCAGCGATGACCTTCAGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298166776|gb|HO010215.1|HO010215EST: GCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTCTACAGA TTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTC
genomic: GCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTCTACAGAgtaagtactc ... aaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accaacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
ccgcgcctcttacttt CT-rich tract
ttactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtactctctctctctacacatcactttttttttataaccaacgaccaccgcgcctcttacttttcctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC