Sequence
atgc intronic sequence ATGC exonic sequence...ttagtggctgatgctgcaaatttatttgaaatgtgctattgttctagtggttttgttactgtgaaaatacttattcactgttttcacccatttcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTGGCCCTGACAATTTTTCTTATTGCTGCTCCTGTTGCAGTTTTCTGTGTCT
Basic information
species | Glycine max |
transcript | GLYMA02G07190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07190.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g70100.1 (Oryza sativa), 3'ss of exon 1
ttagtggctgatgctgcaa-atttatttgaaatgtgcta-ttgttctagtggttttgttactgtgaaaatacttattcactgttttcacccatt-----tcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTGGCCCTGACAATTTTTCTTATTGCTGCTCCTGTTGCAGTTTTCTGTGTCT
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------gctggagtgatgatagctgtatgagatcttcaaatcacttctgcgaatttaagaa-gtaggaaggtgtgattgcagcttatagcttttgtttctttttcagGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGT
upper sequence: GLYMA02G07190.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 3'ss of exon 1
ttagtggctgatgctgcaaatttatttgaaatgtgctattgttctagtg-gttttgttactgtgaaaatacttattca-----ctgttttcacccatt-tcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTGGCCCTGACAATTTTTCTTATTGCTGCTCCTGTTGCAGTTTTCTGTGTCT
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------gctggtg-tattgttttcctggatgattcttgtttttggggaatactttgttctcgaaagtttctctaccgggctgtttattttcgcgttttattttgcagATATTCTTTCTTCAGGGAAGGTTTGTATTTGGGCCAGATGTTAGATCACTGGCGCTGACCATTTGTCTCATTGCTGTCCCTGTTACAATTTTCTGCATCT
upper sequence: GLYMA02G07190.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 3'ss of exon 1
ttagtggctgatgctgcaaatttatttgaaatgtgctattgtt--ctagtggtttt-gttactgtgaa-aatacttattcactgttttcacccatttcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTGGCCCTGACAATTTTTCTTATTGCTGCTCCTGTTGCAGTTTTCTGTGTCT
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ttagacatttaaggtttgaattcatt----atgtggaaatgataatgagtgttttttatttccatgctcgggacgtcaccatctgtttcattacttgtctgcagATATTTTTTCTTCAGGGGAGGCTTATATTTGGACCCGATGTTAGATCTCTGGGGCTGACCATATTCCTTATTGTTGCTCCTGTTACGGTTTTCTGTGTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193400014|gb|FK366997.1|FK366997EST: CGGGTCTACCAAGCGTGGAAGGGGAGCAAT AAATTTTTTCTTCAGGGAAGGTTCATATTTGGACCAGATGCAAGATCATTG
genomic: CGGGTCTACCAAGCGTGGAAGGGGAGCAATgtgagttttc ... tttcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtggttttgttactgtgaaaatacttattcactgttttcacccatttcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTGGCCCTGACAATTTTTCTTATTGCTGCTCCTGTTGCAGTTTTCTGTGTCT
ttttcacccatttcct CT-rich tract
tgaaaatacttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttagtggctgatgctgcaaatttatttgaaatgtgctattgttctagtggttttgttactgtgaaaatacttattcactgttttcacccatttcctgcagAAATTTTTTCTTCAGGGCAGGTTCATATTTGGACCAGATGCAAGATCATTGGCCCTGACAATTTTTCTTATTGCTGCTCCTGTTGCAGTTTTCTGTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -ctgatgc
- - - - - - - - - - - - - - - - - gctattg
- - - - - - - - - - - - - - - - - - - - - - -agtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatac