Sequence
atgc intronic sequence ATGC exonic sequence...tcattggcaatgtcttggggtttatcctgtctagcctgtcttctatgcatatgcttcacttgaggttttcacctttgtctttgattatgctattccacagCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
Basic information
| species | Glycine max |
| transcript | GLYMA02G06820.2 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G06820.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0207g00200.t01 (Vitis vinifera), 3'ss of exon 1
tcattggcaatgtcttggggtttatcctgtctagcctgtcttctatgcatatgcttcacttgaggttttcacctt--tgtctttgattatgct-attccacagCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
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---tgtgaattactttgtaccttttttcgattttattatggaacaggaaaatcttctggatcatttctttcctgcaatgtcattgttcatgttgattttgcagCTTCTTGGTAACAGTTATGGGCTTGGTAATTCCATGGAGTTTGACACTGTCACTGGTGGATGCATACTCTGTCTTTGTTAAATGTCCTCTGCATCAACCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15000808|gb|BI321622.1|BI321622EST: CTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTG CTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAAC-TTGTT
genomic: CTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGgtatctctct ... tattccacagCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcatatgcttcacttgaggttttcacctttgtctttgattatgctattccacagCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGA
ctttgat putative branch site (score: 5)
ctattcc putative PPT
tttgattat TA-rich tract
