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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttgtagtaaaagtaaaacaaactaacaaacacgcaccaatttcaattaaatctcttctttattccttttttcttatcagATCCGGAGGCAGAGGTGATCGCTCTCTCGCCCAAGACTCTCTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAAGGATTCCAGAGAGACCAGAA

Basic information

species Glycine max
transcript GLYMA02G06500.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06510.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g10140.1 (Oryza sativa), 3'ss of exon 1
-----------------------------gtagttgtagtaaaagtaaaacaaactaacaaacacgcaccaatttcaatta--aatctcttctttattccttttttcttatcagATCCGGAGGCAGAGGTGATCGCTCTCTCGCCCAAGACTCTCTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAAGGATTCCAGAGAGACCAGAA
                              || ||  | || |  ||      |     | |    |        |  | |   |||     ||  |||   |  |  |  ||||||| || || ||||||||||| || ||||||||||| ||  | ||||||||| | ||||| |||||||| |||||||| || |||||| | ||||||||
gtgactgactagttaaccgtaccggttgcttaatttgactagagttatgcgtgatggcgagatgatcgatggcgacggtgaccgatcgagcgttcgttcgcgtggtggtg-cagATCCTGATGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACAGGTTCGTTTGCGAGATCTGCAACAAGGGGTTCCAGCGCGACCAGAA

upper sequence: GLYMA02G06510.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G171073_T02 (Zea mays), 3'ss of exon 1
--------------------------------------------------------gtagttgtagtaaaagtaaaacaaactaacaaacacgcaccaatttcaattaaatctcttctttattccttttttcttatcagATCCGGAGGCAGAGGTGATCGCTCTCTCGCCCAAGACTCTCTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAAGGATTCCAGAGAGACCAGAA
                                                        ||   ||        | | | | | ||      |  | | | ||  | |      |    |  |  |  |  |  |    ||||||| || || ||||||||||| || ||||||||||| ||  | ||||||||||| |||||||||||||| |||||||| || |||||| | ||||||||
gtgattgatatttttttgttttgttttgtttttagtcgtttatagtggtccgaggtgtgtgtgcgtgccggggatagctagctctttgtcgtg-atcgatggcgacggcgccgtggccgtggtggtggtggcg---cagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGGGACCAGAA

upper sequence: GLYMA02G06510.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g01430.t01 (Vitis vinifera), 3'ss of exon 1
gtagttgtagtaaaa-gt--aaaacaaactaacaaacacgcaccaatt--tcaattaaatctcttctttattccttttttcttatcagATCCGGAGGCAGAGGTGATCGCTCTCTCGCCCAAGACTCTCTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAAGGATTCCAGAGAGACCAGAA
|||       || |  ||  |||  | || |   |       | || |  | ||||      |||| ||     ||     ||  |||||||||| || |||||||| ||| | || |||||||||||  | ||||| || || || || || || || ||||||||||| |||||| ||||||||||
gtaaaatcgatagatcgtcaaaagtataccacggaggtttggcgaaatggtaaattgttgagcttcgtttggtgttcgaattttgcagATCCGGACGCGGAGGTGATTGCTTTGTCTCCCAAGACTCTAATGGCGACAAATCGATTTGTTTGTGAAATCTGCAACAAAGGGTTCCAGCGAGACCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaacacgcaccaatttcaattaaatctcttctttattccttttttcttatcagATCCGGAGGCAGAGGTGATCGCTCTCTCGCCCAAGACTCTCTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAAGGATTCCAGAGAGACCAGAA
 aactaac  putative branch site (score: 1)
                          tctcttctttattcct  putative PPT
             aatttcaattaaatct  TA-rich tract