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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaaagtcaactagataaaacccttttaagcagcaaatataaccagatctagtagtttgttatcaccaaaactaaggatgcagatctcattgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACAGAGAATGAGGCAGAAACTTGAAGAAGTAAATGTGGCTGCTCAAACTAAT

Basic information

species Glycine max
transcript GLYMA02G06480.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187975|gb|HO031932.1|HO031932
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|298165398|gb|HO011447.1|HO011447
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|298171875|gb|HO021467.1|HO021467
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|298185727|gb|HO030940.1|HO030940
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCGG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|193473397|gb|FK438736.1|FK438736
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|298193579|gb|HO040227.1|HO040227
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|208246581|gb|GE046181.1|GE046181
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|151413045|gb|EV282853.1|EV282853
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|9203807|gb|BE330031.1|BE330031
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|298167850|gb|HO013113.1|HO013113
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|298186773|gb|HO037406.1|HO037406
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|120528844|gb|EH256978.1|EH256978
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGA-TTT---                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|23058483|gb|BU578317.1|BU578317
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: gi|192327573|gb|FK021278.1|FK021278
EST:     ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAG                         TCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: ATTCAATTCAATAGCGATTTAGAGTTTCCAGAAAAGAAATTGATTTTCAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatctagtagtttgttatcaccaaaactaaggatgcagatctcattgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACAGAGAATGAGGCAGAAACTTGAAGAAGTAAATGTGGCTGCTCAAACTAAT
                                        tctcatt  CT-rich tract
           tttgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaaaagtcaactagataaaacccttttaagcagcaaatataaccagatctagtagtttgttatcaccaaaactaaggatgcagatctcattgttgacagTCAGTATCAGATGGATCATTTTGCAGCACATGAAGAGCAACTTGCTTCACAGAGAATGAGGCAGAAACTTGAAGAAGTAAATGTGGCTGCTCAAACTAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
aaaaaag
- - - - - - - gataaaac
- - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgca