1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcttaaaatccagatttaactgcattaattcattaatatgatgaattgaagttggatgattttgttgaatttgctgttatggctcgcgattacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCATGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGG
species | Glycine max |
transcript | GLYMA02G05550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTEST: gi|9820873|gb|BE556383.1|BE556383
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAA GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTEST: gi|51336481|gb|CO980347.1|CO980347
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTEST: gi|5677507|gb|AI938637.1|AI938637
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTEST: gi|58017287|gb|CX704029.1|CX704029
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
ttgaagttggatgattttgttgaatttgctgttatggctcgcgattacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCATGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGG
attttgttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaaaatccagatttaactgcattaattcattaatatgatgaattgaagttggatgattttgttgaatttgctgttatggctcgcgattacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCATGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGG
- - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt