Sequence
atgc intronic sequence ATGC exonic sequence...attgcctatttcctcaaatgtagacacacctctagaaagtgcatgatccaaccagagcattaaattaattaacatgtgatgacagggggaatcggtgcagGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGACTATTCAAGGTGGCCAGACACGCCAGAAGGGTGGAGATCGGTGACTGAGG
Basic information
species | Glycine max |
transcript | GLYMA02G05450.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6070750|gb|AW100137.1|AW100137EST: ATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAA GACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGAC
genomic: ATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAAgtaaacatta ... atcggtgcagGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGAC
EST:
gi|298196008|gb|HO044399.1|HO044399EST: ATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAA GACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGAC
genomic: ATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAAgtaaacatta ... atcggtgcagGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atccaaccagagcattaaattaattaacatgtgatgacagggggaatcggtgcagGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGACTATTCAAGGTGGCCAGACACGCCAGAAGGGTGGAGATCGGTGACTGAGG
aattaac putative branch site (score: 2)
attaaattaattaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgcctatttcctcaaatgtagacacacctctagaaagtgcatgatccaaccagagcattaaattaattaacatgtgatgacagggggaatcggtgcagGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGACTATTCAAGGTGGCCAGACACGCCAGAAGGGTGGAGATCGGTGACTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
-ttgccta
- - - - - -cctcaaa
- - - - - - - - - - - -acacacc
- - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggggg