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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctttcccaattcatcgttttttcgttttattctcaatttctcattttattcaccactgtttttccttcagGAGACGAAACTGCGGAGGCAGGAAGTCACAGCGGATTTGGTCATGGCTGACGGATACGAATCGTTCTTTTCATGCACCCGCACCTCCCAGAAGGGCCGAA

Basic information

species Glycine max
transcript GLYMA02G05430.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03440.t01 (Vitis vinifera), 3'ss of exon 1
gtgctttcccaattcatcgttttttcgttttattct-caatttctcatttt--attcaccactgtttttcc---ttcagGAGACGAAACTGCGGAGGCAGGAAGTCACAGCGGATTTGGTCATGGCTGACGGATACGAATCGTTCTTTTCATGCACCCGCACCTCCCAGAAGGGCCGAA
|||||   || |||  |   | | |  |  || |||  || |||   ||||  ||  |  |     ||| |   | ||||||||||| ||   |||||| ||| | || || ||| |||| ||||| || ||||||||||| |||||||| |||||||||||   |   || || ||  
gtgct---ccgatttctttctctgtattgatactctataaattcatgttttggatcaattatatcgttttcgaatgcagGAGACGAAGCTATCGAGGCATGAACTGACGGCAGATGTGGTGATGGCGGATGGATACGAATCCTTCTTTTCTTGCACCCGCACGAACAGCAAAGGTCGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttcgttttattctcaatttctcattttattcaccactgtttttccttcagGAGACGAAACTGCGGAGGCAGGAAGTCACAGCGGATTTGGTCATGGCTGACGGATACGAATCGTTCTTTTCATGCACCCGCACCTCCCAGAAGGGCCGAA
                                     ccactgtttttccttc  CT-rich tract
                   aatttctcattttatt  TA-rich tract