Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccctgtttctccttcgtcttaatttcagccatgccattacgatccctttactccaatcaattagggtttgttctttcgatcacttgtttatctctaattactattttttgtgcgtaataatagGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCG

Basic information

species Glycine max
transcript GLYMA02G05250.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
gtaaaccctgtttctccttcgtcttaatttcagccatgccattacgatccctttactccaatcaattagggtttgttctttcgatcacttgtttatctctaattactattttttgtgcgtaataatagGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCG
                                        |  ||   | |  | || |  |   |        |  ||  ||||| ||   | |||||  ||      | || ||      |   |||| || |||||||| || |||||||||||||||||||| ||||| || ||| |||| || || || || || ||  | || |||||||| || || ||||
--------------------------------------gtacgacatgcgccctgctgccgtttctcgctccgagaactc-cgatccctaactaatctcccatcg----tgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG

upper sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 1
gtaaaccctgtttctccttcgt-cttaatttcagccatgccattacgatccctttactccaatcaattagggtttgttctttcgatcacttgtttatctctaattactattttttgtg-cgtaataat--agGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCG
         || |  |  || |  ||| || ||    ||||||| | ||  | | |     ||    |     || ||      || |    ||| || |  |||| | |  ||||   | |  | ||  ||||||||||||||||||| |||||||| ||||||||||| || || ||||| |||||  || ||||||| || ||| | |||||||| |||||||| || |
---------gtatgcctatcctatttacttccacttttgccatt-ctatttcctaatatttatactctttttcttctttcacaaattagggttttctcaccgattattttaatttgcatcattctgattcagGCGACTATGATCTGTATCGACAATTCCGAATGGATGCGAAATGGCGATTATTCTCCCACTAGATTTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctttcgatcacttgtttatctctaattactattttttgtgcgtaataatagGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCG
                       ctctaat  putative branch site (score: 3)
                  tttatctctaattact  TA-rich tract